after market sunroof had short and caused it to open and shut when it wanted to.

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Now we had disconnected it and I'm getting crazy sounds from the passenger side under dash,that's not all, my radator keeps goin like the energier bunny. My heater makes a clicking sound when shut off or on. The durango does run smooth like it did. Some people say it is my alternator, some say my main computor. Any ideas